enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products.

Prefix

envipath

Keywords

bibliography/documents biotransformation chemical compound environment environmental contaminant environmental science interaction/pathway method

Links

Homepage

Publications

2021 Holistic evaluation of biodegradation pathway prediction: assessing multi-step reactions and intermediate products

2017 Eawag-Soil in enviPath: a new resource for exploring regulatory pesticide soil biodegradation pathways and half-life data

2015 enviPath--The environmental contaminant biotransformation pathway resource

2023 Defining Applicability Domain in Biodegradation Pathway Prediction

2025 Predictive modeling of biodegradation pathways using transformer architectures

2024 Advancements in biotransformation pathway prediction: enhancements, datasets, and novel functionalities in enviPath

2010 Predicting biodegradation products and pathways: a hybrid knowledge- and machine learning-based approach

2016 A Hybrid Machine Learning and Knowledge Based Approach to Limit Combinatorial Explosion in Biodegradation Prediction

Pattern for Local Unique Identifiers

Local identifiers in enviPath should match this regular expression:
^[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}\/[\w-]+\/[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}$

Example Local Unique Identifier

32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from enviPath should match this regular expression:
^envipath:[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}\/[\w-]+\/[\w^_]{8}-[\w^_]{4}-[\w^_]{4}-[\w^_]{4}-[\w^_]{12}$

Example CURIE

envipath:32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea

Contact

Jörg Wicker   0000-0003-0533-3368

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea is used to demonstrate the providers available for enviPath. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.