{"prefix":"envipath","name":"enviPath","description":"enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products.","pattern":"^[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}\\/[\\w-]+\\/[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}$","uri_format":"https://envipath.org/package/$1","providers":[],"homepage":"https://envipath.org/","contact":{"name":"Jörg Wicker","orcid":"0000-0003-0533-3368","email":"admin@envipath.org"},"example":"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea","example_extras":[],"deprecated":false,"mappings":{"fairsharing":"FAIRsharing.g0c5qn","integbio":"nbdc02011","miriam":"envipath","re3data":"r3d100012715"},"synonyms":[],"keywords":["bibliography/documents","biotransformation","chemical compound","environment","environmental contaminant","environmental science","interaction/pathway","method"],"publications":[{"pubmed":"34479624","doi":"10.1186/s13321-021-00543-x","pmc":"PMC8414759","title":"Holistic evaluation of biodegradation pathway prediction: assessing multi-step reactions and intermediate products","year":2021},{"pubmed":"28229138","doi":"10.1039/c6em00697c","title":"Eawag-Soil in enviPath: a new resource for exploring regulatory pesticide soil biodegradation pathways and half-life data","year":2017},{"pubmed":"26582924","doi":"10.1093/nar/gkv1229","pmc":"PMC4702869","title":"enviPath--The environmental contaminant biotransformation pathway resource","year":2015},{"doi":"10.21203/rs.3.rs-3587632/v1","title":"Defining Applicability Domain in Biodegradation Pathway Prediction","year":2023},{"doi":"10.1186/s13321-025-00969-7","title":"Predictive modeling of biodegradation pathways using transformer architectures","year":2025},{"doi":"10.1186/s13321-024-00881-6","title":"Advancements in biotransformation pathway prediction: enhancements, datasets, and novel functionalities in enviPath","year":2024},{"doi":"10.1093/bioinformatics/btq024","title":"Predicting biodegradation products and pathways: a hybrid knowledge- and machine learning-based approach","year":2010},{"doi":"10.1007/978-3-319-31858-5_5","title":"A Hybrid Machine Learning and Knowledge Based Approach to Limit Combinatorial Explosion in Biodegradation Prediction","year":2016}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"preferred_prefix":"envipath","logo":"https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBaE1CIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--e79cfb498026327ec0f12f47e7a1ed1c3b79e8d3/enviPath-LOGO_SHORT-square.png?disposition=inline"}