The dbEST contains sequence data and other information on "single-pass" cDNA sequences, or "Expressed Sequence Tags", from a number of organisms.

bioinformatics dna life science
Todd M Lowe   0000-0003-3253-6021
Pattern for Local Unique Identifiers

Local identifiers in EST database maintained at the NCBI. should match this regular expression:

Example Local Unique Identifier
BP100000   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from EST database maintained at the NCBI. should match this regular expression:

Example CURIE
1993 dbEST--database for "expressed sequence tags"

A summary of the relations in the Bioregistry schema can be found here.

Has incoming URI collisions

The following resources share a URI format string with dbest:

When generating an extended prefix map, their respective CURIE prefixes and URI prefixes are merged into the record for dbest. If you believe that these are distinct semantic spaces and should not be merged, please open a new issue on the Bioregistry issue tracker for discussion.

Metaregistry EST database maintained at the NCBI.

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext DBEST
EDAM EDAM Ontology logo edam 1105
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.v9fya8
Integbio Integbio logo integbio nbdc00413 logo miriam dbest
N2T Name-to-Thing logo n2t dbest
NCBI National Center for Biotechnology Information Registry logo ncbi dbEST
Prefix Commons Prefix Commons logo prefixcommons dbest
re3data Registry of Research Data Repositories logo re3data r3d100010648

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier BP100000 is used to demonstrate the providers available for EST database maintained at the NCBI.. A guide for curating additional providers can be found here.

Name Metaprefix URI
EST database maintained at the NCBI. dbest
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
CURATOR_REVIEW dbEST through DNA Data Bank of Japan (DDBJ)
bio2rdf Bio2RDF
ebi dbEST through European Nucleotide Archive (ENA)