The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins.

Prefix

dbd

Keywords

genome regulation

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in Transcription Factor Database should match this regular expression:
^\d+$

Example Local Unique Identifier

0045310   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Transcription Factor Database should match this regular expression:
^dbd:\d+$

Example CURIE

dbd:0045310

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for dbd with 2 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE dbd:0045310 is used to demonstrate the provides available for dbd. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.