The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins.

genome regulation
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Transcription Factor Database should match this regular expression:

Example Local Unique Identifier
0045310   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Transcription Factor Database should match this regular expression:

Example CURIE
Metaregistry Transcription Factor Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext DBD
EDAM EDAM Ontology logo edam 2716 logo miriam dbd
N2T Name-to-Thing logo n2t dbd
Pathguide Pathguide logo pathguide 496
Prefix Commons Prefix Commons logo prefixcommons dbd

Providers are various services that resolve CURIEs to URLs. The example CURIE dbd:0045310 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Transcription Factor Database dbd
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF