The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins.
dbd
Local identifiers in Transcription Factor Database should match this
regular expression:
^\d+$
Compact URIs (CURIEs) constructed from Transcription Factor Database should match
this regular expression:
^dbd:\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are
5 mappings to external registries for dbd
with
2 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
DBD
|
|
EDAM
|
edam |
2716
|
|
Identifiers.org
![]() |
miriam |
dbd
|
|
N2T
![]() |
n2t |
dbd
|
|
Prefix Commons
|
prefixcommons |
dbd
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
dbd:0045310
is used to demonstrate the provides available for
dbd
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/dbd:0045310 |