The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins.

genome regulation
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Transcription Factor Database should match this regular expression:

Example Local Unique Identifier
0045310   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Transcription Factor Database should match this regular expression:

Example CURIE
Metaregistry Transcription Factor Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext DBD
EDAM EDAM Ontology logo edam 2716 logo miriam dbd
N2T Name-to-Thing logo n2t dbd
Pathguide Pathguide logo pathguide 496
Prefix Commons Prefix Commons logo prefixcommons dbd

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0045310 is used to demonstrate the providers available for Transcription Factor Database. A guide for curating additional providers can be found here.

Name Metaprefix URI
Transcription Factor Database dbd
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF