The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins.
dbd
Local identifiers in Transcription Factor Database should match this
regular expression:
^\d+$
Compact URIs (CURIEs) constructed from Transcription Factor Database should match
this regular expression:
^dbd:\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
DBD
|
|
EDAM | edam |
2716
|
|
Identifiers.org | miriam |
dbd
|
|
N2T | n2t |
dbd
|
|
Pathguide | pathguide |
496
|
|
Prefix Commons | prefixcommons |
dbd
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
dbd:0045310
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/dbd:0045310 |