The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins.

Prefix

dbd

Keywords

genome regulation

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in Transcription Factor Database should match this regular expression:
^\d+$

Example Local Unique Identifier

0045310   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Transcription Factor Database should match this regular expression:
^dbd:\d+$

Example CURIE

dbd:0045310

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0045310 is used to demonstrate the providers available for Transcription Factor Database. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.