CIViC variants are usually genomic alterations, including single nucleotide variants (SNVs), insertion/deletion events (indels), copy number alterations (CNV’s such as amplification or deletion), structural variants (SVs such as translocations and inversions), and other events that differ from the “normal” genome. In some cases a CIViC variant may represent events of the transcriptome or proteome. For example, ‘expression’ or ‘over-expression’ is a valid variant. Regardless of the variant, it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional relevance that is clinical in nature to be entered in CIViC. i.e. There must be some rationale for why curation of this variant could ultimately aid clinical decision making.

Prefix

civic.vid

Alternative Prefixes

civic.variant

License

CC0-1.0

Links

Homepage

Contact

Malachi Griffith   0000-0002-6388-446X   malachig

Pattern for Local Unique Identifiers

Local identifiers in CIViC variant should match this regular expression:
^[0-9]+$

Example Local Unique Identifier

12   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from CIViC variant should match this regular expression:
^civic\.vid:[0-9]+$

Example CURIE

civic.vid:12

A summary of the relations in the Bioregistry schema can be found here.

Part Of (bfo:0000050 )

civic (not directly registered)

In Collection

Global Biodata Coalition - Global Core Biodata Resources

The metaregistry provides mappings between the Bioregistry and other registries. There are 2 mappings to external registries for this resource with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 12 is used to demonstrate the providers available for CIViC variant. A guide for curating additional providers can be found here.