CIViC variants are usually genomic alterations, including single nucleotide variants (SNVs), insertion/deletion events (indels), copy number alterations (CNV’s such as amplification or deletion), structural variants (SVs such as translocations and inversions), and other events that differ from the “normal” genome. In some cases a CIViC variant may represent events of the transcriptome or proteome. For example, ‘expression’ or ‘over-expression’ is a valid variant. Regardless of the variant, it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional relevance that is clinical in nature to be entered in CIViC. i.e. There must be some rationale for why curation of this variant could ultimately aid clinical decision making.
civic.vid
Local identifiers in CIViC variant should match this
regular expression:
^[0-9]+$
Compact URIs (CURIEs) constructed from CIViC variant should match
this regular expression:
^civic\.vid:[0-9]+$
A summary of the relations in the Bioregistry schema can be found here.
bfo:0000050
)
The metaregistry provides mappings between the Bioregistry and other registries. There are 2 mappings to external registries for this resource with 2 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
Identifiers.org | miriam |
civic.vid
|
|
Wikidata | wikidata |
P3329
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 12
is used to demonstrate the providers
available for CIViC variant. A guide for curating additional providers can be found
here.
Name | Metaprefix | URI |
---|---|---|
CIViC variant | civic.vid |
https://civicdb.org/links/variant/12 |
Bioregistry | bioregistry |
https://bioregistry.io/civic.vid:12 |
Identifiers.org | miriam |
https://identifiers.org/civic.vid:12 |