BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML).
Local identifiers in BioSimulators should match this
Compact URIs (CURIEs) constructed from BioSimulators should match
this regular expression:
The metaregistry provides mappings between the Bioregistry and other registries. There are
2 mappings to external registries for
|Registry Name||Metaprefix||External Prefix|
Providers are various services that resolve CURIEs to URLs. The example CURIE
biosimulators:vcell is used to demonstrate the provides available for
biosimulators. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.