BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML).

Prefix
biosimulators
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in BioSimulators should match this regular expression:
^[a-zA-Z0-9-_]+$

Example Local Unique Identifier
vcell   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from BioSimulators should match this regular expression:
^biosimulators:[a-zA-Z0-9-_]+$

Example CURIE
biosimulators:vcell
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 1 mappings to external registries for biosimulators.

Registry Name Metaprefix External Prefix
Identifiers.org miriam biosimulators
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE biosimulators:vcell is used to demonstrate the provides available for biosimulators. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
BioSimulators biosimulators https://biosimulators.org/simulators/vcell
Bioregistry bioregistry https://bioregistry.io/biosimulators:vcell
Identifiers.org miriam https://identifiers.org/biosimulators:vcell