BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML).
Local identifiers in BioSimulators should match this
Compact URIs (CURIEs) constructed from BioSimulators should match
this regular expression:
The metaregistry provides mappings between the Bioregistry and other registries. There are
3 mappings to external registries for
3 unique external prefixes.
|Registry Name||Registry Metaprefix||External Prefix||Curate|
|Registry of Research Data Repositories||
Providers are various services that resolve CURIEs to URLs. The example CURIE
is used to demonstrate the provides available for
biosimulators. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.