BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML).
biosimulators
Local identifiers in BioSimulators should match this
regular expression:
^[a-zA-Z0-9-_]+$
Compact URIs (CURIEs) constructed from BioSimulators should match
this regular expression:
^biosimulators:[a-zA-Z0-9-_]+$
The metaregistry provides mappings between the Bioregistry and other registries. There are
2 mappings to external registries for biosimulators
.
Registry Name | Metaprefix | External Prefix |
---|---|---|
FAIRSharing
|
fairsharing |
FAIRsharing.pwEima
|
Identifiers.org
![]() |
miriam |
biosimulators
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
biosimulators:vcell
is used to demonstrate the provides available for
biosimulators
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
BioSimulators | biosimulators |
https://biosimulators.org/simulators/vcell |
Bioregistry | bioregistry |
https://bioregistry.io/biosimulators:vcell |
Identifiers.org | miriam |
https://identifiers.org/biosimulators:vcell |