Biofactoid is a web-based system that empowers authors to capture and share machine-readable summaries of molecular-level interactions described in their publications.

Prefix

biofactoid

Keywords

biocuration database relationships

License

CC0-1.0

Links

Homepage Repository Request Discussion

Contact

Jeffrey Wong   0000-0002-8912-5699   jvwong

Pattern for Local Unique Identifiers

Local identifiers in Biofactoid should match this regular expression:
^[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$

Example Local Unique Identifier

fdb8a927-45c3-48b7-9743-cbb5e16837fa   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Biofactoid should match this regular expression:
^biofactoid:[0-9a-fA-F]{8}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{4}\-[0-9a-fA-F]{12}$

Example CURIE

biofactoid:fdb8a927-45c3-48b7-9743-cbb5e16837fa

Publications

2021 Author-sourced capture of pathway knowledge in computable form using Biofactoid

Contributors

• submitter Benjamin M. Gyori   0000-0001-9439-5346   bgyori

Reviewer

Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier fdb8a927-45c3-48b7-9743-cbb5e16837fa is used to demonstrate the providers available for Biofactoid. A guide for curating additional providers can be found here.