arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome.

Prefix

arraymap

Keywords

bioinformatics biomedical science genomics life science

Links

Homepage @progenetix

Contact

Michael Baudis   0000-0002-9903-4248   mbaudis

Pattern for Local Unique Identifiers

Local identifiers in ArrayMap should match this regular expression:
^[\w\-:,]{3,64}$

Example Local Unique Identifier

icdom:8500_3   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from ArrayMap should match this regular expression:
^arraymap:[\w\-:,]{3,64}$

Example CURIE

arraymap:icdom:8500_3

Publications

• 2015 The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.
• 2014 arrayMap 2014: an updated cancer genome resource.
• 2014 Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens.
• 2012 arrayMap: a reference resource for genomic copy number imbalances in human malignancies.

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for arraymap with 3 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE arraymap:icdom:8500_3 is used to demonstrate the provides available for arraymap. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.