arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome.
arraymap
Local identifiers in ArrayMap should match this
regular expression:
^[\w\-:,]{3,64}$
Compact URIs (CURIEs) constructed from ArrayMap should match
this regular expression:
^arraymap:[\w\-:,]{3,64}$
The metaregistry provides mappings between the Bioregistry and other registries. There are
5 mappings to external registries for arraymap
with
3 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
ARRAYMAP
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.1fbc5y
|
|
Identifiers.org
![]() |
miriam |
arraymap
|
|
N2T
![]() |
n2t |
arraymap
|
|
re3data
![]() |
re3data |
r3d100012630
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
arraymap:icdom:8500_3
is used to demonstrate the provides available for
arraymap
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
ArrayMap | arraymap |
https://www.arraymap.org/pgx:icdom:8500_3 |
Bioregistry | bioregistry |
https://bioregistry.io/arraymap:icdom:8500_3 |
Identifiers.org | miriam |
https://identifiers.org/arraymap:icdom:8500_3 |
Name-to-Thing | n2t |
https://n2t.net/arraymap:icdom:8500_3 |