arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome.

bioinformatics biomedical science genomics life science
Michael Baudis   0000-0002-9903-4248   mbaudis
Pattern for Local Unique Identifiers

Local identifiers in ArrayMap should match this regular expression:

Example Local Unique Identifier
icdom:8500_3   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from ArrayMap should match this regular expression:

Example CURIE
Metaregistry ArrayMap

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext ARRAYMAP
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.1fbc5y logo miriam arraymap
N2T Name-to-Thing logo n2t arraymap
re3data Registry of Research Data Repositories logo re3data r3d100012630

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier icdom:8500_3 is used to demonstrate the providers available for ArrayMap. A guide for curating additional providers can be found here.

Name Metaprefix URI
ArrayMap arraymap
Bioregistry bioregistry miriam
Name-to-Thing n2t