biocontext:
  is_identifiers: true
  is_obo: false
  prefix: ARRAYMAP
  uri_format: http://identifiers.org/arraymap/$1
fairsharing:
  abbreviation: arrayMap
  contact:
    email: mbaudis@me.com
    name: Michael Baudis
    orcid: 0000-0002-9903-4248
  description: Part of the Progenetix project, the arrayMap database facilitates the
    study of the genetics of human cancer. The Progenetix project provides the data
    customisation and visualization tools to mine the available data. The arrayMap
    database is developed by the group "Theoretical Cytogenetics and Oncogenomics"
    at the Department of Molecular Life Sciences of the University of Zurich.
  homepage: http://arraymap.org
  license: https://creativecommons.org/licenses/by-nc-nd/2.5/ch
  name: arrayMap - Genomic Array Data for Cancer CNV Profiles
  prefix: FAIRsharing.1fbc5y
  publications:
  - doi: 10.1371/journal.pone.0036944
    pubmed_id: 22629346
    title: 'arrayMap: a reference resource for genomic copy number imbalances in human
      malignancies.'
  - doi: 10.1093/nar/gku1123
    pubmed_id: 25428357
    title: 'arrayMap 2014: an updated cancer genome resource.'
  - doi: 10.1186/1471-2164-15-82
    pubmed_id: 24476156
    title: Chromothripsis-like patterns are recurring but heterogeneously distributed
      features in a survey of 22,347 cancer genome screens.
  - doi: 10.1093/nar/gkv1310
    pubmed_id: 26615188
    title: 'The SIB Swiss Institute of Bioinformatics'' resources: focus on curated
      databases.'
  subjects:
  - Genomics
  - Bioinformatics
  - Life Science
  - Biomedical Science
  twitter: progenetix
mappings:
  biocontext: ARRAYMAP
  fairsharing: FAIRsharing.1fbc5y
  miriam: arraymap
  n2t: arraymap
  re3data: r3d100012630
miriam:
  deprecated: false
  description: arrayMap is a collection of pre-processed oncogenomic array data sets
    and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation
    commonly found in cancer genomes. arrayMap data is assembled from public repositories
    and supplemented with additional sources, using custom curation pipelines. This
    information has been mapped to multiple editions of the reference human genome.
  homepage: https://www.arraymap.org
  id: '00000621'
  name: ArrayMap
  namespaceEmbeddedInLui: false
  pattern: ^[\w\-:,]{3,64}$
  prefix: arraymap
  sampleId: icdom:8500_3
  uri_format: https://www.arraymap.org/pgx:$1
n2t:
  description: arrayMap is a collection of pre-processed oncogenomic array data sets
    and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation
    commonly found in cancer genomes. arrayMap data is assembled from public repositories
    and supplemented with additional sources, using custom curation pipelines. This
    information has been mapped to multiple editions of the reference human genome.
  example: icdom:8500_3
  homepage: https://www.arraymap.org
  name: ArrayMap
  namespaceEmbeddedInLui: false
  pattern: ^[\w\-:,]{3,64}$
  prefix: arraymap
  uri_format: https://www.arraymap.org/pgx:$1
publications:
- doi: 10.1093/nar/gkv1310
  pmc: PMC4702916
  pubmed: '26615188'
  title: 'The SIB Swiss Institute of Bioinformatics'' resources: focus on curated
    databases.'
  year: 2015
- doi: 10.1093/nar/gku1123
  pmc: PMC4383937
  pubmed: '25428357'
  title: 'arrayMap 2014: an updated cancer genome resource.'
  year: 2014
- doi: 10.1186/1471-2164-15-82
  pmc: PMC3909908
  pubmed: '24476156'
  title: Chromothripsis-like patterns are recurring but heterogeneously distributed
    features in a survey of 22,347 cancer genome screens.
  year: 2014
- doi: 10.1371/journal.pone.0036944
  pmc: PMC3356349
  pubmed: '22629346'
  title: 'arrayMap: a reference resource for genomic copy number imbalances in human
    malignancies.'
  year: 2012
- doi: 10.1371/journal.pone.0036944
  pubmed: '22629346'
  title: 'arrayMap: a reference resource for genomic copy number imbalances in human
    malignancies.'
- doi: 10.1093/nar/gku1123
  pubmed: '25428357'
  title: 'arrayMap 2014: an updated cancer genome resource.'
- doi: 10.1186/1471-2164-15-82
  pubmed: '24476156'
  title: Chromothripsis-like patterns are recurring but heterogeneously distributed
    features in a survey of 22,347 cancer genome screens.
- doi: 10.1093/nar/gkv1310
  pubmed: '26615188'
  title: 'The SIB Swiss Institute of Bioinformatics'' resources: focus on curated
    databases.'
re3data:
  description: arrayMap is a repository of cancer genome profiling data. Original)
    from primary repositories (e.g. NCBI GEO, EBI ArrayExpress, TCGA) is re-processed
    and annotated for metadata. Unique visualization of the processed data allows
    critical evaluation of data quality and genome information. Structured metadata
    provides easy access to summary statistics, with a focus on copy number aberrations
    in cancer entities.
  homepage: https://arraymap.progenetix.org/
  name: arrayMap
  prefix: r3d100012630
  xrefs:
    fairsharing: FAIRsharing.1fbc5y
    omics: 02596