AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information.

Prefix

aphidbase.transcript

Keywords

genome

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in AphidBase Transcript should match this regular expression:
^ACYPI\d{6}(-RA)?$

Example Local Unique Identifier

ACYPI000159   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from AphidBase Transcript should match this regular expression:
^aphidbase\.transcript:ACYPI\d{6}(-RA)?$

Example CURIE

aphidbase.transcript:ACYPI000159

Publications

2010 AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome.

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for aphidbase.transcript with 2 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE aphidbase.transcript:ACYPI000159 is used to demonstrate the provides available for aphidbase.transcript. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.