AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information.

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in AphidBase Transcript should match this regular expression:

Example Local Unique Identifier
ACYPI000159   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from AphidBase Transcript should match this regular expression:

Example CURIE
2010 AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome
Metaregistry AphidBase Transcript

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext APHIDBASE.TRANSCRIPT
Identifiers.org Identifiers.org logo miriam aphidbase.transcript
N2T Name-to-Thing logo n2t aphidbase.transcript
Prefix Commons Prefix Commons logo prefixcommons aphidbase

Providers are various services that resolve CURIEs to URLs. The example CURIE aphidbase.transcript:ACYPI000159 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
AphidBase Transcript aphidbase.transcript http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=ACYPI000159
Bioregistry bioregistry https://bioregistry.io/aphidbase.transcript:ACYPI000159
Identifiers.org miriam https://identifiers.org/aphidbase.transcript:ACYPI000159
Name-to-Thing n2t https://n2t.net/aphidbase.transcript:ACYPI000159
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/aphidbase:ACYPI000159