AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information.

Fabrice Legeai   0000-0002-6472-4839
Pattern for Local Unique Identifiers

Local identifiers in AphidBase Transcript should match this regular expression:

Example Local Unique Identifier
ACYPI000159   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from AphidBase Transcript should match this regular expression:

Example CURIE
2010 AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome
Metaregistry AphidBase Transcript

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext APHIDBASE.TRANSCRIPT
Identifiers.org Identifiers.org logo miriam aphidbase.transcript
N2T Name-to-Thing logo n2t aphidbase.transcript
Prefix Commons Prefix Commons logo prefixcommons aphidbase

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier ACYPI000159 is used to demonstrate the providers available for AphidBase Transcript. A guide for curating additional providers can be found here.

Name Metaprefix URI
AphidBase Transcript aphidbase.transcript http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=ACYPI000159
Bioregistry bioregistry https://bioregistry.io/aphidbase.transcript:ACYPI000159
Identifiers.org miriam https://identifiers.org/aphidbase.transcript:ACYPI000159
Name-to-Thing n2t https://n2t.net/aphidbase.transcript:ACYPI000159
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/aphidbase:ACYPI000159