3DMET is a database collecting three-dimensional structures of natural metabolites.

chemical life science metabolite metabolomics structure
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in 3D Metabolites should match this regular expression:

Example Local Unique Identifier
B00162   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from 3D Metabolites should match this regular expression:

Example CURIE
Metaregistry 3D Metabolites

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext 3DMET
EDAM EDAM Ontology logo edam 2635
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.5ab0n7
Integbio Integbio logo integbio nbdc00351
Identifiers.org Identifiers.org logo miriam 3dmet
N2T Name-to-Thing logo n2t 3dmet
Prefix Commons Prefix Commons logo prefixcommons 3dmet
Wikidata Wikidata Property logo wikidata P2796

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier B00162 is used to demonstrate the providers available for 3D Metabolites. A guide for curating additional providers can be found here.

Name Metaprefix URI
3D Metabolites 3dmet http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=B00162
Bioregistry bioregistry https://bioregistry.io/3dmet:B00162
Identifiers.org miriam https://identifiers.org/3dmet:B00162
Name-to-Thing n2t https://n2t.net/3dmet:B00162
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/3dmet:B00162