3DMET is a database collecting three-dimensional structures of natural metabolites.

Prefix

3dmet

Keywords

chemical life science metabolite metabolomics structure

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in 3D Metabolites should match this regular expression:
^B\d{5}$

Example Local Unique Identifier

B00162   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from 3D Metabolites should match this regular expression:
^3dmet:B\d{5}$

Example CURIE

3dmet:B00162

Publications

• 2018 Chemical curation to improve data accuracy: recent development of the 3DMET database.
• 2013 Three-dimensional structure database of natural metabolites (3DMET): a novel database of curated 3D structures.

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for 3dmet with 4 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE 3dmet:B00162 is used to demonstrate the provides available for 3dmet. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.