Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB.
rapdb.transcript
Local identifiers in Rice annotation Project database should match this
regular expression:
^Os\S+t\d{7}-\d{2}$
Compact URIs (CURIEs) constructed from Rice annotation Project database should match
this regular expression:
^rapdb\.transcript:Os\S+t\d{7}-\d{2}$
The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 3 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
GO | go |
RAP-DB
|
|
Identifiers.org | miriam |
rapdb.transcript
|
|
NCBI | ncbi |
RAP-DB
|
|
Prefix Commons | prefixcommons |
rapdb
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
rapdb.transcript:Os01t0883800-02
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/rapdb:Os01t0883800-02 |