Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB.

Prefix
rapdb.transcript
Keywords
dna genome
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Rice annotation Project database should match this regular expression:
^Os\S+t\d{7}-\d{2}$

Example Local Unique Identifier
Os01t0883800-02   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Rice annotation Project database should match this regular expression:
^rapdb\.transcript:Os\S+t\d{7}-\d{2}$

Example CURIE
rapdb.transcript:Os01t0883800-02
Metaregistry Rice annotation Project database

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
GO Gene Ontology Registry logo go RAP-DB
Identifiers.org Identifiers.org logo miriam rapdb.transcript
NCBI National Center for Biotechnology Information Registry logo ncbi RAP-DB
Prefix Commons Prefix Commons logo prefixcommons rapdb
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE rapdb.transcript:Os01t0883800-02 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Rice annotation Project database rapdb.transcript https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=Os01t0883800-02
Bioregistry bioregistry https://bioregistry.io/rapdb.transcript:Os01t0883800-02
Identifiers.org miriam https://identifiers.org/rapdb.transcript:Os01t0883800-02
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/rapdb:Os01t0883800-02