ProDom is a database of protein domain families generated from the global comparison of all available protein sequences.

Prefix

prodom

Keywords

classification life science protein

Links

Homepage

Contact

Daniel Kahn   0000-0003-1644-0169

Pattern for Local Unique Identifiers

Local identifiers in ProDom should match this regular expression:
^PD\d+$

Example Local Unique Identifier

PD10000   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from ProDom should match this regular expression:
^prodom:PD\d+$

Example CURIE

prodom:PD10000

Publications

• 2005 The ProDom database of protein domain families: more emphasis on 3D
• 2002 ProDom: automated clustering of homologous domains

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier PD10000 is used to demonstrate the providers available for ProDom. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.