PEPhub is a database, web interface, and API for sharing, retrieving, and validating sample metadata. PEPhub uses Portable Encapsulated Projects (PEP) biological metadata standard to store, edit, and access PEPs in one place.
pephub
Local identifiers in PEPhub should match this
regular expression:
^[A-Za-z0-9_\-]+(/[A-Za-z0-9_\-]+)?$
Compact URIs (CURIEs) constructed from PEPhub should match
this regular expression:
^pephub:[A-Za-z0-9_\-]+(/[A-Za-z0-9_\-]+)?$
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier geo is used to demonstrate the providers
available for PEPhub. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| PEPhub | pephub |
https://pephub.databio.org/geo |
| Bioregistry | bioregistry |
https://bioregistry.io/pephub:geo |