appears_in: []
contact:
  email: nsheffield@virginia.edu
  github: nsheff
  name: Nathan Sheffield
  orcid: 0000-0001-5643-4068
contributor:
  email: m.naguthana@hotmail.com
  github: nagutm
  name: Mufaddal Naguthanawala
  orcid: 0009-0009-5240-7463
depends_on: []
deprecated: false
description: PEPhub is a database, web interface, and API for sharing, retrieving,
  and validating sample metadata. PEPhub uses Portable Encapsulated Projects (PEP)
  biological metadata standard to store, edit, and access PEPs in one place.
example: geo
example_extras:
- geo/gse185244
- bedbase/gse198944
- databio/encode_batch_1
github_request_issue: 1194
homepage: https://pephub.databio.org/
keywords: []
mappings: {}
name: PEPhub
pattern: ^[A-Za-z0-9_\-]+(/[A-Za-z0-9_\-]+)?$
preferred_prefix: pephub
prefix: pephub
providers: []
publications:
- doi: 10.1093/gigascience/giae033
  pmc: PMC11238423
  pubmed: '38991851'
  title: 'PEPhub: a database, web interface, and API for editing, sharing, and validating
    biological sample metadata'
  year: 2024
reviewer:
  email: b.gyori@northeastern.edu
  github: bgyori
  name: Benjamin M. Gyori
  orcid: 0000-0001-9439-5346
synonyms: []
uri_format: https://pephub.databio.org/$1
