PDBsum provides an at-a-glance overview of every macromolecular structure deposited in the Protein Data Bank (PDB), giving schematic diagrams of the molecules in each structure and of the interactions between them.

This resource is a provider. This means that while it may have its own prefix, it actually reuses the identifiers provided by the pdb prefix. For all use cases, you should use pdb instead of pdbsum.

Prefix

pdbsum

Keywords

3d structure 3d structure databases image/movie interaction protein structure

License

http://www.ebi.ac.uk/Information/termsofuse.html

Links

Homepage

Publications

https://bioregistry.io/pubmed:9433130

2017 PDBsum: Structural summaries of PDB entries

2013 PDBsum additions

2008 PDBsum new things

https://bioregistry.io/pubmed:17384425

https://bioregistry.io/pubmed:15608193

https://bioregistry.io/pubmed:11125097

Pattern for Local Unique Identifiers

Missing LUI pattern

Example Local Unique Identifier

1kfv   Resolve

Example CURIE

pdbsum:1kfv

Contact

Missing Contact

Reviewer

Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

A summary of the relations in the Bioregistry schema can be found here.

Provides

pdb

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 1kfv is used to demonstrate the providers available for PDBsum; at-a-glance overview of macromolecular structures. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.