PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana.

Prefix

pathbank

Keywords

animal genetics bioinformatics biology cell biology cheminformatics database management drug metabolism endocrinology genetics human genetics medical informatics metabolomics microbiology molecular biology molecular microbiology plant genetics proteomics systems biology transcriptomics

License

ODbL-1.0

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in PathBank should match this regular expression:
^(SMP|PW)\d+$

Example Local Unique Identifier

SMP0000219   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from PathBank should match this regular expression:
^pathbank:(SMP|PW)\d+$

Example CURIE

pathbank:SMP0000219

Contributors

• submitter Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

The metaregistry provides mappings between the Bioregistry and other registries. There are 2 mappings to external registries for this resource with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier SMP0000219 is used to demonstrate the providers available for PathBank. A guide for curating additional providers can be found here.