Registry Ontology of Microbial Phenotypes

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An ontology of phenotypes covering microbes

Prefix: omp
Preferred Prefix: OMP
Keywords: biology data mining microbiology obo ontology phenotype
Version: 2024-03-25
License: CC-BY-3.0
Links: Homepage Repository OBO OWL
Contact: James C. Hu 0000-0001-9016-2684 jimhu-tamu
Pattern for Local Unique Identifiers: Local identifiers in Ontology of Microbial Phenotypes should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0005067 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Ontology of Microbial Phenotypes should match this regular expression:
^OMP:\d{7}$
Example CURIE: OMP:0005067
Publications: 2014 An ontology for microbial phenotypes

Ontology

A summary of the relations in the Bioregistry schema can be found here.

Appears In (1) (bioregistry.schema:0000018 ): MCO

Metaregistry Ontology of Microbial Phenotypes

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`OMP`
BioContext	`biocontext`	`OMP`
BioPortal	`bioportal`	`OMP`
FAIRSharing	`fairsharing`	`FAIRsharing.cc3f2x`
OBO Foundry	`obofoundry`	`omp`
OLS	`ols`	`omp`
OntoBee	`ontobee`	`OMP`

RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/OMP_$1

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0005067 is used to demonstrate the providers available for Ontology of Microbial Phenotypes. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Ontology of Microbial Phenotypes	`omp`	http://purl.obolibrary.org/obo/OMP_0005067
Ontology of Microbial Phenotypes (RDF)	`rdf`	http://purl.obolibrary.org/obo/OMP_0005067
Bioregistry	`bioregistry`	https://bioregistry.io/omp:0005067
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/OMP_0005067
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols4/ontologies/omp/terms?iri=http://purl.obolibrary.org/obo/OMP_0005067
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/OMP/?p=classes&conceptid=http://purl.obolibrary.org/obo/OMP_0005067

Get the version:

>>> import bioregistry as br
>>> br.get_version("omp")
'2024-03-25'

This name annotation was originally annotated in OBO Foundry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("omp")
'Ontology of Microbial Phenotypes'

Get the license:

>>> import bioregistry as br
>>> br.get_license("omp")
'CC-BY-3.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("omp")
'http://microbialphenotypes.org'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("omp")
'https://github.com/microbialphenotypes/OMP-ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("omp")
'http://purl.obolibrary.org/obo/omp.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("omp")
'http://purl.obolibrary.org/obo/omp.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("omp")
'James C. Hu'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("omp")
'jimhu@tamu.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("omp")
'jimhu-tamu'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("omp")
'0000-0001-9016-2684'