The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery.

Prefix

nucleotide

Keywords

cdna/est genetic variation genome/gene repository sequence

Links

Homepage

Pattern for Local Unique Identifiers

Local identifiers in Nucleotide should match this regular expression:
^[a-zA-Z0-9_\.]+$

Example Local Unique Identifier

880798137   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Nucleotide should match this regular expression:
^nucleotide:[a-zA-Z0-9_\.]+$

Example CURIE

nucleotide:880798137

Contact

Missing Contact

A summary of the relations in the Bioregistry schema can be found here.

Has URI collision with (bioregistry.schema:0000016 )

This resource shares one or more URI format strings with insdc .

Therefore, when generating an extended prefix map, nucleotide, its CURIE prefix synonyms, and its URI prefix synonyms are merged into the record for insdc . If you believe that these are two distinct semantic spaces and should not be merged, please open a new issue on the Bioregistry issue tracker for discussion.

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 2 mappings to external registries with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 880798137 is used to demonstrate the providers available for Nucleotide. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.