NAPP (Nucleic Acids Phylogenetic Profiling) is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters.

Prefix

napp

Keywords

clustering nucleotide

Links

Homepage

Publications

2011 NAPP: the Nucleic Acid Phylogenetic Profile Database

2009 Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles

Pattern for Local Unique Identifiers

Local identifiers in Nucleic Acids Phylogenetic Profiling should match this regular expression:
^\d+$

Example Local Unique Identifier

351   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Nucleic Acids Phylogenetic Profiling should match this regular expression:
^napp:\d+$

Example CURIE

napp:351

Contact

Missing Contact

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 351 is used to demonstrate the providers available for Nucleic Acids Phylogenetic Profiling. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.