NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters.

Prefix

napp

Keywords

clustering genomics nucleotide

Links

Homepage

Contact

Daniel Gautheret   0000-0002-1508-8469

Pattern for Local Unique Identifiers

Local identifiers in Nucleic Acids Phylogenetic Profiling should match this regular expression:
^\d+$

Example Local Unique Identifier

351   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Nucleic Acids Phylogenetic Profiling should match this regular expression:
^napp:\d+$

Example CURIE

napp:351

Publications

• 2011 NAPP: the Nucleic Acid Phylogenetic Profile Database
• 2009 Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 351 is used to demonstrate the providers available for Nucleic Acids Phylogenetic Profiling. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.