The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software. From this web site, you can
- Prefix
msigdb- Alternative Prefixes
- msig
- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in Molecular Signatures Database should match this regular expression:
^M\d+$ - Example Local Unique Identifier
- M1 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Molecular Signatures Database should match this regular expression:
^msigdb:M\d+$ - Example CURIE
- msigdb:M1
- Contributors
-
- submitter Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt
Metaregistry Molecular Signatures Database
The metaregistry provides mappings between the Bioregistry and other registries. There are 2 mappings to external registries for this resource with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
Biolink
|
biolink |
MSigDB
|
|
Integbio
|
integbio |
nbdc02550
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier M1 is used to demonstrate the providers
available for Molecular Signatures Database. A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| Molecular Signatures Database | msigdb |
https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/M1 |
| Bioregistry | bioregistry |
https://bioregistry.io/msigdb:M1 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
biopragmatics |
MMSigDB from Biopragmatics | https://biopragmatics.github.io/providers/msigdb/M1 |