appears_in: []
contact:
  email: jmesirov@ucsd.edu
  name: Jill P. Mesirov
  orcid: 0000-0002-9755-2818
contributor:
  email: cthoyt@gmail.com
  github: cthoyt
  name: Charles Tapley Hoyt
  orcid: 0000-0003-4423-4370
depends_on: []
deprecated: false
description: The Molecular Signatures Database (MSigDB) is a collection of annotated
  gene sets for use with GSEA software. From this web site, you can
download_json: https://w3id.org/biopragmatics/resources/msigdb/msigdb.json.gz
download_obo: https://w3id.org/biopragmatics/resources/msigdb/msigdb.obo.gz
download_owl: https://w3id.org/biopragmatics/resources/msigdb/msigdb.owl.gz
example: M1
example_extras: []
homepage: https://www.gsea-msigdb.org
keywords:
- expression
- gene family
- gene group
- gene set
- genome/gene
- health/disease
- interaction/pathway
- ontology
- pathway
- reaction
license: CC-BY-4.0
logo: https://www.gsea-msigdb.org/gsea/images/GSEA-logo.gif
mappings:
  biolink: MSigDB
  integbio: nbdc02550
name: Molecular Signatures Database
namespace_in_lui: false
pattern: ^M\d+$
preferred_prefix: msigdb
prefix: msigdb
providers:
- code: biopragmatics
  description: An OBO to Website of MMSigDB
  homepage: https://biopragmatics.github.io/providers/msigdb/
  name: MMSigDB from Biopragmatics
  uri_format: https://biopragmatics.github.io/providers/msigdb/$1
publications:
- doi: 10.1073/pnas.0506580102
  pubmed: '16199517'
synonyms:
- msig
uri_format: https://www.gsea-msigdb.org/gsea/msigdb/human/geneset/$1
