Registry Taxonomic rank vocabulary

A vocabulary of taxonomic ranks (species, family, phylum, etc)

Prefix: taxrank
Preferred Prefix: TAXRANK
Keywords: life science obo ontology taxonomic classification taxonomy
Version: 2024-11-28
License: CC0-1.0
Links: Homepage Repository OBO OWL
Contact: Jim Balhoff 0000-0002-8688-6599 balhoff
Pattern for Local Unique Identifiers: Local identifiers in Taxonomic rank vocabulary should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0000001 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Taxonomic rank vocabulary should match this regular expression:
^TAXRANK:\d{7}$
Example CURIE: TAXRANK:0000001
Publications: 2013 The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

Metaregistry Taxonomic rank vocabulary

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`TAXRANK`
AgroPortal	`agroportal`	`TAXRANK`
BioContext	`biocontext`	`TAXRANK`
BioPortal	`bioportal`	`TAXRANK`
FAIRSharing	`fairsharing`	`FAIRsharing.p1sejz`
OBO Foundry	`obofoundry`	`taxrank`
OLS	`ols`	`taxrank`
OntoBee	`ontobee`	`TAXRANK`
Prefix Commons	`prefixcommons`	`taxrank`

RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/TAXRANK_$1

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000001 is used to demonstrate the providers available for Taxonomic rank vocabulary. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Taxonomic rank vocabulary	`taxrank`	http://purl.obolibrary.org/obo/TAXRANK_0000001
Taxonomic rank vocabulary (RDF)	`rdf`	http://purl.obolibrary.org/obo/TAXRANK_0000001
Bioregistry	`bioregistry`	https://bioregistry.io/taxrank:0000001
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/TAXRANK_0000001
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols4/ontologies/taxrank/terms?iri=http://purl.obolibrary.org/obo/TAXRANK_0000001
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/TAXRANK/?p=classes&conceptid=http://purl.obolibrary.org/obo/TAXRANK_0000001

Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code	Name	URL
`bio2rdf`	Bio2RDF	http://bio2rdf.org/taxrank:0000001

Get the version:

>>> import bioregistry as br
>>> br.get_version("taxrank")
'2024-11-28'

Get the license:

>>> import bioregistry as br
>>> br.get_license("taxrank")
'CC0-1.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("taxrank")
'https://github.com/phenoscape/taxrank'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("taxrank")
'https://github.com/phenoscape/taxrank'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("taxrank")
'http://purl.obolibrary.org/obo/taxrank.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("taxrank")
'http://purl.obolibrary.org/obo/taxrank.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("taxrank")
'Jim Balhoff'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("taxrank")
'balhoff@renci.org'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("taxrank")
'balhoff'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("taxrank")
'0000-0002-8688-6599'