The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort.

Prefix
sbo
Preferred Prefix
SBO
Keywords
mathematical model modeling and simulation molecular interaction obo ontology pathway model systems biology
Version
2021-08-28
License
Artistic License 2.0
Links
Homepage Repository OBO OWL
Contact
Rahuman Sheriff   0000-0003-0705-9809   rsmsheriff
Pattern for Local Unique Identifiers

Local identifiers in Systems Biology Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0000485   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Systems Biology Ontology should match this regular expression:
^SBO:\d{7}$

Example CURIE
SBO:0000485
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource annotates the namespaceEmbeddedInLUI as true. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For Systems Biology Ontology, the banana looks like SBO:. Therefore, you may see local unique identifiers for this resource that look like SBO:0000485 (instead of the canonical form 0000485) and CURIEs for this resource that look like SBO:SBO:0000485 (instead of the canonical form SBO:0000485). The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
Publications
Ontology

A summary of the relations in the Bioregistry schema can be found here.

Appears In (2) (bioregistry.schema:0000018 )
PROCO SCDO
In Collection
NDFI4Cat Collection
Metaregistry Systems Biology Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl SBO
BioContext biocontext SBO
BioPortal BioPortal Prefixes logo bioportal SBO
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.s19src
Identifiers.org Identifiers.org logo miriam sbo
N2T Name-to-Thing logo n2t sbo
OBO Foundry OBO Foundry logo obofoundry sbo
OLS Ontology Lookup Service logo ols sbo
OntoBee OntoBee logo ontobee SBO
Prefix Commons Prefix Commons logo prefixcommons sbo
RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/SBO_$1

Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000485 is used to demonstrate the providers available for Systems Biology Ontology. A guide for curating additional providers can be found here.

Name Metaprefix URI
Systems Biology Ontology sbo http://purl.obolibrary.org/obo/SBO_0000485
Systems Biology Ontology (RDF) rdf http://purl.obolibrary.org/obo/SBO_0000485
Bioregistry bioregistry https://bioregistry.io/sbo:0000485
Identifiers.org miriam https://identifiers.org/SBO:0000485
OBO Foundry obofoundry http://purl.obolibrary.org/obo/SBO_0000485
Ontology Lookup Service ols https://www.ebi.ac.uk/ols4/ontologies/sbo/terms?iri=http://purl.obolibrary.org/obo/SBO_0000485
Name-to-Thing n2t https://n2t.net/sbo:0000485
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/SBO/?p=classes&conceptid=http://purl.obolibrary.org/obo/SBO_0000485
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/sbo:0000485
biomodels BioModels http://biomodels.net/SBO/SBO_0000485