Registry The Amphioxus Development and Anatomy Ontology

Suggest

An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum).

Prefix: amphx
Preferred Prefix: AMPHX
Keywords: obo ontology
Version: 2020-12-18
License: CC-BY-3.0
Links: Homepage Repository OBO OWL
References: GitHub PR https://github.com/biopragmatics/bioregistry/pull/1098

Identifier Standards

Pattern for Local Unique Identifiers: Local unique identifiers in The Amphioxus Development and Anatomy Ontology should match this regular expression:
^\d+$
Example Local Unique Identifier: 1000160 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from The Amphioxus Development and Anatomy Ontology should match this regular expression:
^AMPHX:\d+$
Example CURIE: AMPHX:1000160
Format String for RDF URIs: http://purl.obolibrary.org/obo/AMPHX_$1
Example RDF URI: http://purl.obolibrary.org/obo/AMPHX_1000160

Contacts

Contact: Hector Escriva 0000-0001-7577-5028 hescriva
Contributor: contributor Sumir H. Pandit 0000-0002-1216-4761 sumirp

Ontology

A summary of the relations in the Bioregistry schema can be found here.

Depends On (1): UBERON

Mappings to External Registries

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 6 mappings to external registries with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`AMPHX`
BioPortal	`bioportal`	`AMPHX`
OBO Foundry	`obofoundry`	`amphx`
OLS	`ols`	`amphx`
OntoBee	`ontobee`	`AMPHX`
Wikidata (E)	`wikidata.entity`	`Q112972859`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 1000160 is used to demonstrate the providers available for The Amphioxus Development and Anatomy Ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
The Amphioxus Development and Anatomy Ontology	`amphx`	http://purl.obolibrary.org/obo/AMPHX_1000160
The Amphioxus Development and Anatomy Ontology (RDF)	`rdf`	http://purl.obolibrary.org/obo/AMPHX_1000160
Bioregistry	`bioregistry`	https://bioregistry.io/amphx:1000160
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/AMPHX_1000160
EBI Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/amphx/terms?iri=http://purl.obolibrary.org/obo/AMPHX_1000160
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/AMPHX/?p=classes&conceptid=http://purl.obolibrary.org/obo/AMPHX_1000160

Get the version:

>>> import bioregistry as br
>>> br.get_version("amphx")
'2020-12-18'

This name annotation was originally annotated in OBO Foundry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("amphx")
'The Amphioxus Development and Anatomy Ontology'

Get the license:

>>> import bioregistry as br
>>> br.get_license("amphx")
'CC-BY-3.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("amphx")
'https://github.com/EBISPOT/amphx_ontology'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("amphx")
'https://github.com/EBISPOT/amphx_ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("amphx")
'http://purl.obolibrary.org/obo/amphx.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("amphx")
'http://purl.obolibrary.org/obo/amphx.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("amphx")
'Hector Escriva'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("amphx")
'hescriva@obs-banyuls.fr'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("amphx")
'hescriva'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("amphx")
'0000-0001-7577-5028'