GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest.

Prefix

gnpis

Keywords

dna sequence expression data genetic map genetic polymorphism genome map genotype germplasm life science phenotype

Links

Homepage

Publications

2013 GnpIS: an information system to integrate genetic and genomic data from plants and fungi

2019 Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS

2018 Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data

2017 Mining Plant Genomic and Genetic Data Using the GnpIS Information System

Pattern for Local Unique Identifiers

Local identifiers in GnpIS should match this regular expression:
^[A-Za-z0-9]+$

Example Local Unique Identifier

AY109603   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from GnpIS should match this regular expression:
^gnpis:[A-Za-z0-9]+$

Example CURIE

gnpis:AY109603

Contact

Hadi Quesneville   0000-0003-3001-4908

Group Contact

Mailing List

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier AY109603 is used to demonstrate the providers available for GnpIS. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.