The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme.
Local identifiers in Catalytic Site Atlas should match this
regular expression:
^[0-9][A-Za-z0-9]{3}$
Compact URIs (CURIEs) constructed from Catalytic Site Atlas should match
this regular expression:
^csa:[0-9][A-Za-z0-9]{3}$
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
CSA
|
|
Identifiers.org
|
miriam |
csa
|
|
N2T
|
n2t |
csa
|
|
|
Prefix Commons
|
prefixcommons |
csa
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 1a05 is used to demonstrate the providers
available for Catalytic Site Atlas. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Catalytic Site Atlas | csa |
https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=1a05 |
| Bioregistry | bioregistry |
https://bioregistry.io/csa:1a05 |
| Identifiers.org | miriam |
https://identifiers.org/csa:1a05 |
| Name-to-Thing | n2t |
https://n2t.net/csa:1a05 |
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/csa:1a05 |