APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier.

This resource is a provider. This means that while it may have its own prefix, it actually reuses the identifiers provided by the uniprot prefix. For all use cases, you should use uniprot instead of apid.interactions.

Prefix

apid.interactions

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in APID Interactomes should match this regular expression:
^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$

Example Local Unique Identifier

P01116   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from APID Interactomes should match this regular expression:
^apid\.interactions:([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$

Example CURIE

apid.interactions:P01116

References

GitHub PR https://github.com/biopragmatics/bioregistry/pull/1098

Contributors

• contributor Sumir H Pandit   0000-0002-1216-4761   sumirp

A summary of the relations in the Bioregistry schema can be found here.

Provides

uniprot

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier P01116 is used to demonstrate the providers available for APID Interactomes. A guide for curating additional providers can be found here.