Registry Agricultural Online Access

AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century.

Prefix: agricola
Alternative Prefixes: AGRICOLA_ID AGR
Links: Homepage
Publications: 2020 Alliance of Genome Resources Portal: unified model organism research platform
References: GitHub PR https://github.com/biopragmatics/bioregistry/pull/1098

Identifier Standards

Pattern for Local Unique Identifiers: Local identifiers in Agricultural Online Access should match this regular expression:
^(IND|GUA)\d+$
Example Local Unique Identifiers: IND608186955 Resolve
GUA85008832 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Agricultural Online Access should match this regular expression:
^agricola:(IND|GUA)\d+$
Example CURIEs: agricola:IND608186955
agricola:GUA85008832

Contacts

Contact: Judith A Blake 0000-0001-8522-334X judyblake
Contributors: contributor Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt; contributor Chris Mungall 0000-0002-6601-2165 cmungall; contributor Sumir H Pandit 0000-0002-1216-4761 sumirp

Ontology

A summary of the relations in the Bioregistry schema can be found here.

Appears In (2): CHEBI pmc

Mappings to External Registries

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 6 mappings to external registries with 3 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
BioContext	`biocontext`	`AGRICOLA`
GO	`go`	`AGRICOLA_ID`
Identifiers.org	`miriam`	`agricola`
N2T	`n2t`	`agricola`
Prefix Commons	`prefixcommons`	`agricola`
Wikidata (E)	`wikidata.entity`	`Q4651693`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier IND608186955 is used to demonstrate the providers available for Agricultural Online Access. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
Agricultural Online Access	`agricola`	https://europepmc.org/article/AGR/IND608186955
Bioregistry	`bioregistry`	https://bioregistry.io/agricola:IND608186955
Identifiers.org	`miriam`	https://identifiers.org/agricola:IND608186955
Name-to-Thing	`n2t`	https://n2t.net/agricola:IND608186955

Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Provider Name	Provider Code	URL
Bio2RDF	`bio2rdf`	http://bio2rdf.org/agricola:IND608186955
USDA Legacy Endpoint	`usda`	https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId=IND608186955

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("AGRICOLA_ID")
'agricola'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("agricola")
{'AGRICOLA_ID', 'AGR'}

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("agricola")
'Agricultural Online Access'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("agricola")
'http://agricola.nal.usda.gov/'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("agricola")
'Judith A Blake'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("agricola")
'judith.blake@jax.org'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("agricola")
'judyblake'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("agricola")
'0000-0001-8522-334X'