MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data.
- Prefix
massive- Keywords
- functional genomics metabolomics metaproteomics omics phenomics proteomics
- Links
- Homepage Repository
- Publications
- 2020 MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets
- 2020 The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics
- 2018 Assembling the Community-Scale Discoverable Human Proteome
- 2016 The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
- 2016 Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in MassIVE should match this regular expression:
^MSV\d+$ - Example Local Unique Identifier
- MSV000082131 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from MassIVE should match this regular expression:
^massive:MSV\d+$ - Example CURIE
- massive:MSV000082131
Contacts
- Contact
- Mingxun Wang 0000-0001-7647-6097
Metaregistry MassIVE
The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
MASSIVE
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.LYsiMd
|
|
Identifiers.org
|
miriam |
massive
|
|
N2T
|
n2t |
massive
|
|
UniProt
|
uniprot |
DB-0241
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier MSV000082131 is used to demonstrate the providers
available for MassIVE. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| MassIVE | massive |
https://www.omicsdi.org/dataset/massive/MSV000082131 |
| Bioregistry | bioregistry |
https://bioregistry.io/massive:MSV000082131 |
| Identifiers.org | miriam |
https://identifiers.org/massive:MSV000082131 |
| Name-to-Thing | n2t |
https://n2t.net/massive:MSV000082131 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
|
MassIVE | https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=MSV000082131 |