Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl.

Prefix

genetree

Keywords

classification gene phylogenomic databases protein

Links

Homepage

Publications

2016 Ensembl comparative genomics resources

2006 Ensembl 2006

Pattern for Local Unique Identifiers

Local identifiers in GeneTree should match this regular expression:
^ENSGT\d+$

Example Local Unique Identifier

ENSGT00550000074763   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from GeneTree should match this regular expression:
^genetree:ENSGT\d+$

Example CURIE

genetree:ENSGT00550000074763

Contact

Paul Flicek   0000-0002-3897-7955

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier ENSGT00550000074763 is used to demonstrate the providers available for GeneTree. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.