Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with metazoa genomes.
- Prefix
ensembl.metazoa- Keywords
- genome genome annotation databases genome/gene sequence
- Links
- Homepage
- Publications
- 2020 Ensembl Genomes 2020-enabling non-vertebrate genomic research
- 2015 Ensembl Genomes 2016: more genomes, more complexity
- https://bioregistry.io/pubmed:19884133
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in Ensembl Metazoa should match this regular expression:
^\w+(\.)?\d+$ - Example Local Unique Identifier
- FBtr0084214 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Ensembl Metazoa should match this regular expression:
^ensembl\.metazoa:\w+(\.)?\d+$ - Example CURIE
- ensembl.metazoa:FBtr0084214
Contacts
- Contact
-
Paul Flicek
0000-0002-3897-7955
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- In Collection (1)
- Synapse.org external links
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 8 mappings to external registries with 5 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
ENSEMBL.METAZOA
|
|
GO
|
go |
EnsemblMetazoa
|
|
Integbio
|
integbio |
nbdc00435
|
|
Identifiers.org
|
miriam |
ensembl.metazoa
|
|
N2T
|
n2t |
ensembl.metazoa
|
|
Prefix Commons
|
prefixcommons |
ensembl.metazoa
|
|
re3data
|
re3data |
r3d100011198
|
|
UniProt
|
uniprot |
DB-0149
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier FBtr0084214 is used to demonstrate the providers
available for Ensembl Metazoa. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Ensembl Metazoa | ensembl.metazoa |
https://metazoa.ensembl.org/id/FBtr0084214 |
| Bioregistry | bioregistry |
https://bioregistry.io/ensembl.metazoa:FBtr0084214 |
| Identifiers.org | miriam |
https://identifiers.org/ensembl.metazoa:FBtr0084214 |
| Name-to-Thing | n2t |
https://n2t.net/ensembl.metazoa:FBtr0084214 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/ensembl.metazoa:FBtr0084214 |