Registry Chemical Entity Materials and Reactions Ontological Framework

A data model for managing information about chemical entities, ranging from atoms through molecules to complex mixtures.

Prefix: chemrof
Preferred Prefix: ChEMROF
Keywords: chemistry nfdi4chem ontology
License: CC0-1.0
Links: Homepage Repository OWL

Identifier Standards

Pattern for Local Unique Identifiers: Missing LUI pattern
Example Local Unique Identifier: FullySpecifiedAtom Resolve
Example CURIE: ChEMROF:FullySpecifiedAtom
Pattern for RDF URIs: https://w3id.org/chemrof/$1
Example RDF URI: https://w3id.org/chemrof/FullySpecifiedAtom

Contacts

Contact: Chris Mungall 0000-0002-6601-2165 cmungall
Contributors: submitter Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Ontology

A summary of the relations in the Bioregistry schema can be found here.

In Collection (1): NFDI4Chem Collection

Mappings to External Registries

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 3 mappings to external registries with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`CHEMROF`
BioPortal	`bioportal`	`CHEMROF`
TIB-TS	`tib`	`chemrof`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier FullySpecifiedAtom is used to demonstrate the providers available for Chemical Entity Materials and Reactions Ontological Framework. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
Chemical Entity Materials and Reactions Ontological Framework	`chemrof`	https://chemkg.github.io/chemrof/FullySpecifiedAtom
Chemical Entity Materials and Reactions Ontological Framework (RDF)	`rdf`	https://w3id.org/chemrof/FullySpecifiedAtom
Bioregistry	`bioregistry`	https://bioregistry.io/chemrof:FullySpecifiedAtom

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("chemrof")
'Chemical Entity Materials and Reactions Ontological Framework'

Get the license:

>>> import bioregistry as br
>>> br.get_license("chemrof")
'CC0-1.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("chemrof")
'https://chemkg.github.io/chemrof/'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("chemrof")
'https://github.com/chemkg/chemrof'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("chemrof")
'https://raw.githubusercontent.com/chemkg/chemrof/main/schema/owl/chemrof.owl.ttl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("chemrof")
'Chris Mungall'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("chemrof")
'cjmungall@lbl.gov'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("chemrof")
'cmungall'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("chemrof")
'0000-0002-6601-2165'