The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution.
cdd
Local identifiers in Conserved Domain Database at NCBI should match this
regular expression:
^(cd)?\d{5}$
Compact URIs (CURIEs) constructed from Conserved Domain Database at NCBI should match
this regular expression:
^cdd:(cd)?\d{5}$
The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for this resource with 6 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
CDD
|
|
EDAM | edam |
2666
|
|
FAIRSharing | fairsharing |
FAIRsharing.ea287c
|
|
GO | go |
CDD
|
|
Integbio | integbio |
nbdc00401
|
|
Identifiers.org | miriam |
cdd
|
|
N2T | n2t |
cdd
|
|
NCBI | ncbi |
CDD
|
|
Prefix Commons | prefixcommons |
cdd
|
|
re3data | re3data |
r3d100012041
|
|
UniProt | uniprot |
DB-0214
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier cd00400
is used to demonstrate the providers
available for Conserved Domain Database at NCBI. A guide for curating additional providers can be found
here.
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/cdd:cd00400 |