The Alliance of Genome Resources creates identifiers for several biological entity types including genes, other sequence features, constructs, morpholinos, TALENs, CRISPRs, variants, alleles, genotypes, strains, environments and experiments, phenotype annotations, expression annotations, disease annotations, interactions, and variant annotations.

The Alliance of Genome Resources was founded by the following Model Organism databases and the Gene Ontology Consortium and distributes high-quality, curated knowledge about several model organisms in a single, unified location:

• ZFIN - Zebrafish Information Network
• WormBase
• MGI - Mouse Genome Informatics
• RGD - Rat Genome Database
• SGD - Saccharomyces Genome Database
• FlyBase
• Xenbase

Prefix

agrkb

Keywords

model organism database organism-specific databases

Links

Homepage Request Discussion

Publications

https://bioregistry.io/pubmed:31552413

Pattern for Local Unique Identifiers

Local identifiers in Alliance of Genome Resources Knowledge Base should match this regular expression:
^[1-9][0-9]{14}$

Example Local Unique Identifier

100000000000001   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Alliance of Genome Resources Knowledge Base should match this regular expression:
^agrkb:[1-9][0-9]{14}$

Example CURIE

agrkb:100000000000001

Contact

Chris Mungall   0000-0002-6601-2165   cmungall

Contributors

submitter Sierra Moxon   0000-0002-8719-7760   sierra-moxon

Reviewer

Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

A summary of the relations in the Bioregistry schema can be found here.

In Collection (2)

Global Biodata Coalition - Global Core Biodata Resources Synapse.org external links

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 2 mappings to external registries with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 100000000000001 is used to demonstrate the providers available for Alliance of Genome Resources Knowledge Base. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.