Registry Plant Transcription Factor Database

The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors.

Prefix
planttfdb
Links
Homepage
Contact
Missing Contact
Pattern
^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\._\-#]*)$
Namespace in Pattern
False
Example Identifier
Ath_AT1G01030.1   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for planttfdb.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam planttfdb
Name-to-Thing n2t planttfdb
Prefix Commons prefixcommons PLANTTFDB
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE planttfdb:Ath_AT1G01030.1 is used to demonstrate the provides available for planttfdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
Plant Transcription Factor Database planttfdb http://planttfdb.cbi.pku.edu.cn/tf.php?uid=Ath_AT1G01030.1
Bioregistry bioregistry https://bioregistry.io/planttfdb:Ath_AT1G01030.1
Identifiers.org miriam https://identifiers.org/planttfdb:Ath_AT1G01030.1
Name-to-Thing n2t https://n2t.net/planttfdb:Ath_AT1G01030.1