The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors.
planttfdb
Local identifiers in Plant Transcription Factor Database should match this
regular expression:
^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\._\-#]*)$
Compact URIs (CURIEs) constructed from Plant Transcription Factor Database should match
this regular expression:
^planttfdb:[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\._\-#]*)$
The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 4 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
PLANTTFDB
|
|
FAIRSharing | fairsharing |
FAIRsharing.ex3fqk
|
|
Identifiers.org | miriam |
planttfdb
|
|
N2T | n2t |
planttfdb
|
|
Pathguide | pathguide |
497
|
|
Prefix Commons | prefixcommons |
planttfdb
|
|
re3data | re3data |
r3d100011301
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
planttfdb:Ath_AT1G01030.1
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/planttfdb:Ath_AT1G01030.1 |