Registry NCBI Taxonomy
The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.
- Prefix
ncbitaxon- Preferred Prefix
NCBITaxon- Alternative Prefixes
- TAX NCBITaxon taxon uniprot.taxonomy taxid NCBI_taxid NCBI_Taxon_ID taxonomy TaxonomyID
- Version
- 2022-02-21
- Links
- Homepage Repository OBO OWL OBO JSON
- Contact
- Frederic Bastian 0000-0002-9415-5104 fbastian
- Pattern for Local Unique Identifiers
-
Local identifiers in NCBI Taxonomy should match this regular expression:
^\d+$ - Example Local Unique Identifier
- 2170610 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from NCBI Taxonomy should match this regular expression:
^NCBITaxon:\d+$ - Example CURIE
- NCBITaxon:2170610
- References
-
- Publication The NCBI Taxonomy database
- Publication GenBank
- Publication NCBI Taxonomy: a comprehensive update on curation, resources and tools.
Metaregistry NCBI Taxonomy
The metaregistry provides mappings between the Bioregistry and other registries. There are
15 mappings to external registries for ncbitaxon with
7 unique external prefixes.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| AberOWL | aberowl |
NCBITAXON
|
| AgroPortal | agroportal |
NCBITAXON
|
| BioContext | biocontext |
NCBITaxon
|
| BioPortal Prefixes | bioportal |
NCBITAXON
|
| Cellosaurus Registry | cellosaurus |
NCBI_TaxID
|
FAIRSharing
|
fairsharing |
FAIRsharing.fj07xj
|
| Gene Ontology Registry | go |
taxon
|
Identifiers.org
|
miriam |
taxonomy
|
Name-to-Thing
|
n2t |
taxonomy
|
| National Center for Biotechnology Information Registry | ncbi |
taxon
|
OBO Foundry
|
obofoundry |
NCBITaxon
|
Ontology Lookup Service
|
ols |
ncbitaxon
|
| OntoBee | ontobee |
NCBITaxon
|
| Prefix Commons | prefixcommons |
uniprot.taxonomy
|
Wikidata Property
|
wikidata |
P685
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
ncbitaxon:
is used to demonstrate the provides available for
ncbitaxon. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
| scholia | Scholia | https://scholia.toolforge.org/ncbi-taxon/2170610 |
| CURATOR_REVIEW | Taxonomy through UniProt PURL | https://purl.uniprot.org/taxonomy/2170610 |
| ebi | European Nucleotide Archive (ENA) | https://www.ebi.ac.uk/ena/data/view/Taxon:2170610 |
| CURATOR_REVIEW | Bio2RDF | https://bio2rdf.org/taxonomy:2170610 |