Registry NCBI organismal classification
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The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.

Prefix
ncbitaxon
Preferred Prefix
NCBITaxon
Alternative Prefixes
taxon NCBI_taxid taxonomy taxid NCBI_Taxon_ID NCBITaxon TaxonomyID TAX
Version
2021-06-10
Links
Homepage OBO OWL OBO JSON
Contact
frederic.bastian@unil.ch
Pattern
^\d+$
Namespace in Pattern
False
Example Identifier
2170610   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 12 mappings to external registries for ncbitaxon.

Registry Name Metaprefix Metaidentifier
BioPortal Prefixes bioportal NCBITAXON
Cellosaurus Registry cellosaurus NCBI_TaxID
Gene Ontology Registry go taxon
Identifiers.org miriam taxonomy
Name-to-Thing n2t taxonomy
National Center for Biotechnology Information Registry ncbi taxon
OBO Foundry obofoundry NCBITaxon
Ontology Lookup Service ols ncbitaxon
OntoBee ontobee NCBITaxon
Prefix Commons prefixcommons NCBITaxon
Scholia scholia ncbi-taxon
Wikidata Property wikidata P685
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE ncbitaxon:2170610 is used to demonstrate the provides available for ncbitaxon. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
NCBI organismal classification ncbitaxon https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2170610
Bioregistry bioregistry https://bioregistry.io/ncbitaxon:2170610
Identifiers.org miriam https://identifiers.org/NCBITaxon:2170610
OBO Foundry obofoundry http://purl.obolibrary.org/obo/NCBITaxon_2170610
Ontology Lookup Service ols https://www.ebi.ac.uk/ols/ontologies/ncbitaxon/terms?iri=http://purl.obolibrary.org/obo/NCBITaxon_2170610
Name-to-Thing n2t https://n2t.net/taxonomy:2170610
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/NCBITAXON/?p=classes&conceptid=http://purl.obolibrary.org/obo/NCBITaxon_2170610
Scholia scholia https://scholia.toolforge.org/ncbi-taxon/2170610
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
CURATOR_REVIEW Taxonomy through UniProt PURL https://purl.uniprot.org/taxonomy/2170610
ebi European Nucleotide Archive (ENA) https://www.ebi.ac.uk/ena/data/view/Taxon:2170610
CURATOR_REVIEW Bio2RDF https://bio2rdf.org/taxonomy:2170610