The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks.
- Prefix
genepio- Preferred Prefix
GENEPIO- Keywords
- epidemiology food genome genomics obo ontology pathogen
- Version
- 2023-08-19
- License
- CC-BY-3.0
- Links
- Homepage Repository OWL
- Contact
- Damion Dooley 0000-0002-8844-9165 ddooley
- Pattern for Local Unique Identifiers
-
Local identifiers in Genomic Epidemiology Ontology should match this regular expression:
^\d{7}$ - Example Local Unique Identifier
- 0001885 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Genomic Epidemiology Ontology should match this regular expression:
^GENEPIO:\d{7}$ - Example CURIE
- GENEPIO:0001885
Metaregistry Genomic Epidemiology Ontology
The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
AberOWL
|
aberowl |
GENEPIO
|
|
| BioContext | biocontext |
GENEPIO
|
|
BioPortal
|
bioportal |
GENEPIO
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.y1mmbv
|
|
OBO Foundry
|
obofoundry |
genepio
|
|
OLS
|
ols |
genepio
|
|
OntoBee
|
ontobee |
GENEPIO
|
RDF Information
When using this resource in RDF, the following URI format should be used:
http://purl.obolibrary.org/obo/GENEPIO_$1
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 0001885 is used to demonstrate the providers
available for Genomic Epidemiology Ontology. A guide for curating additional providers can be found
here.