Virus-Host DB organizes data about the relationships between viruses and their hosts, represented in the form of pairs of NCBI taxonomy IDs for viruses and their hosts. Virus-Host DB covers viruses with complete genomes stored in 1) NCBI/RefSeq and 2) GenBank whose accession numbers are listed in EBI Genomes. The host information is collected from RefSeq, GenBank (in free text format), UniProt, ViralZone, and manually curated with additional information obtained by literature surveys.
This resource is a provider. This means that
while it may have its own prefix, it actually reuses the identifiers provided by the
ncbitaxon
prefix. For all use cases, you should use ncbitaxon
instead of virushostdb
.
virushostdb
The metaregistry provides mappings between the Bioregistry and other registries. There are 2 mappings to external registries for this resource with 2 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
Integbio | integbio |
nbdc02395
|
|
Prefix Commons | prefixcommons |
virushostdb
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
virushostdb:438782
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
Virus-HostDB | virushostdb |
https://www.genome.jp/virushostdb/438782 |
Bioregistry | bioregistry |
https://bioregistry.io/virushostdb:438782 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/virushostdb:438782 |