Registry Global Proteome Machine Database

The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns.

Prefix
gpmdb
Links
Homepage
Contact
Missing Contact
Pattern
^GPM\d+$
Namespace in Pattern
False
Example Identifier
GPM32310002988   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for gpmdb.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam gpmdb
Name-to-Thing n2t gpmdb
Prefix Commons prefixcommons GPMDB
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE gpmdb:GPM32310002988 is used to demonstrate the provides available for gpmdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
Global Proteome Machine Database gpmdb http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32310002988
Bioregistry bioregistry https://bioregistry.io/gpmdb:GPM32310002988
Identifiers.org miriam https://identifiers.org/gpmdb:GPM32310002988
Name-to-Thing n2t https://n2t.net/gpmdb:GPM32310002988
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
omicsdi GPMDB through OmicsDI https://www.omicsdi.org/dataset/gpmdb/GPM32310002988