Registry Transcription Factor Database

The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins.

Prefix
dbd
Links
Homepage
Contact
Missing Contact
Pattern
^\d+$
Namespace in Pattern
False
Example Identifier
0045310   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for dbd.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam dbd
Name-to-Thing n2t dbd
Prefix Commons prefixcommons DBD
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE dbd:0045310 is used to demonstrate the provides available for dbd. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
Transcription Factor Database dbd http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:0045310+cat:DBD
Bioregistry bioregistry https://bioregistry.io/dbd:0045310
Identifiers.org miriam https://identifiers.org/dbd:0045310
Name-to-Thing n2t https://n2t.net/dbd:0045310