The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins.

Prefix
dbd
Keywords
genome regulation
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Transcription Factor Database should match this regular expression:
^\d+$

Example Local Unique Identifier
0045310   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Transcription Factor Database should match this regular expression:
^dbd:\d+$

Example CURIE
dbd:0045310
Metaregistry Transcription Factor Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext DBD
EDAM EDAM Ontology logo edam 2716
Identifiers.org Identifiers.org logo miriam dbd
N2T Name-to-Thing logo n2t dbd
Pathguide Pathguide logo pathguide 496
Prefix Commons Prefix Commons logo prefixcommons dbd
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0045310 is used to demonstrate the providers available for Transcription Factor Database. A guide for curating additional providers can be found here.

Name Metaprefix URI
Transcription Factor Database dbd http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:0045310+cat:DBD
Bioregistry bioregistry https://bioregistry.io/dbd:0045310
Identifiers.org miriam https://identifiers.org/dbd:0045310
Name-to-Thing n2t https://n2t.net/dbd:0045310
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/dbd:0045310