The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information.
- Prefix
umbbd.reaction- Alternative Prefixes
- UM-BBD_reactionID
- Links
- Homepage
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in EAWAG Biocatalysis/Biodegradation Database reaction should match this regular expression:
^r\d+$ - Example Local Unique Identifier
- r0001 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from EAWAG Biocatalysis/Biodegradation Database reaction should match this regular expression:
^umbbd\.reaction:r\d+$ - Example CURIE
- umbbd.reaction:r0001
Contacts
- Contact
- Missing Contact
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
UMBBD.REACTION
|
|
GO
|
go |
UM-BBD_reactionID
|
|
Identifiers.org
|
miriam |
umbbd.reaction
|
|
N2T
|
n2t |
umbbd.reaction
|
|
Wikidata (E)
|
wikidata.entity |
Q24188985
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier r0001 is used to demonstrate the providers
available for EAWAG Biocatalysis/Biodegradation Database reaction. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| EAWAG Biocatalysis/Biodegradation Database reaction | umbbd.reaction |
http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=r0001 |
| Bioregistry | bioregistry |
https://bioregistry.io/umbbd.reaction:r0001 |
| Identifiers.org | miriam |
https://identifiers.org/umbbd.reaction:r0001 |
| Name-to-Thing | n2t |
https://n2t.net/umbbd.reaction:r0001 |