Logo for Plant Trait Ontology A controlled vocabulary to describe phenotypic traits in plants.

Prefix
to
Preferred Prefix
TO
Keywords
botany life cycle obo ontology phenotype plant structure trait
Version
2023-07-17
License
CC-BY-4.0
Links
Homepage Repository OBO OWL
Contact
Pankaj Jaiswal   0000-0002-1005-8383   jaiswalp
Pattern for Local Unique Identifiers

Local identifiers in Plant Trait Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier
0000630   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Plant Trait Ontology should match this regular expression:
^TO:\d{7}$

Example CURIE
TO:0000630
Publications
2018 The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
Ontology

A summary of the relations in the Bioregistry schema can be found here.

Appears In (1) (bioregistry.schema:0000018 )
AGRO
Metaregistry Plant Trait Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl TO
AgroPortal AgroPortal logo agroportal TO
BioContext biocontext TO
BioPortal BioPortal Prefixes logo bioportal PTO
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.w69t6r
OBO Foundry OBO Foundry logo obofoundry to
OLS Ontology Lookup Service logo ols to
OntoBee OntoBee logo ontobee TO
Prefix Commons Prefix Commons logo prefixcommons pto
RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/TO_$1

Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000630 is used to demonstrate the providers available for Plant Trait Ontology. A guide for curating additional providers can be found here.

Name Metaprefix URI
Plant Trait Ontology to http://purl.obolibrary.org/obo/TO_0000630
Plant Trait Ontology (RDF) rdf http://purl.obolibrary.org/obo/TO_0000630
Bioregistry bioregistry https://bioregistry.io/to:0000630
OBO Foundry obofoundry http://purl.obolibrary.org/obo/TO_0000630
Ontology Lookup Service ols https://www.ebi.ac.uk/ols4/ontologies/to/terms?iri=http://purl.obolibrary.org/obo/TO_0000630
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/PTO/?p=classes&conceptid=http://purl.obolibrary.org/obo/TO_0000630
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/pto:0000630