TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins.

Prefix

tigrfam

Keywords

family and domain databases protein

Links

Homepage

Publications

https://bioregistry.io/pubmed:33270901

References

Other https://ftp.ncbi.nlm.nih.gov/hmm/TIGRFAMs/license_and_availability.txt

GitHub Issue https://github.com/biopragmatics/bioregistry/issues/366

Pattern for Local Unique Identifiers

Local identifiers in TIGRFAMS should match this regular expression:
^TIGR\d+$

Example Local Unique Identifier

TIGR00010   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from TIGRFAMS should match this regular expression:
^tigrfam:TIGR\d+$

Example CURIE

tigrfam:TIGR00010

Contact

Missing Contact

Contributors

contributor Chris Mungall   0000-0002-6601-2165   cmungall

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 7 mappings to external registries with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier TIGR00010 is used to demonstrate the providers available for TIGRFAMS. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.