TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used.

Prefix

tarbase

Keywords

bibliography/documents genome/gene interaction/pathway method rna

Links

Homepage

Publications

2018 DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions

2014 DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions

2008 The database of experimentally supported targets: a functional update of TarBase

2005 TarBase: A comprehensive database of experimentally supported animal microRNA targets

Pattern for Local Unique Identifiers

Local identifiers in TarBase should match this regular expression:
^[a-z]{3}\-(mir|let|lin)\-\w+(\-\w+\-\w+)?$

Example Local Unique Identifier

hsa-let-7a-2-3p   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from TarBase should match this regular expression:
^tarbase:[a-z]{3}\-(mir|let|lin)\-\w+(\-\w+\-\w+)?$

Example CURIE

tarbase:hsa-let-7a-2-3p

Contact

Missing Contact

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier hsa-let-7a-2-3p is used to demonstrate the providers available for TarBase. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.