TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used.

Prefix

tarbase

Keywords

biomedical science life science

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in TarBase should match this regular expression:
^[a-z]{3}\-(mir|let|lin)\-\w+(\-\w+\-\w+)$

Example Local Unique Identifier

hsa-let-7a-2-3p   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from TarBase should match this regular expression:
^tarbase:[a-z]{3}\-(mir|let|lin)\-\w+(\-\w+\-\w+)$

Example CURIE

tarbase:hsa-let-7a-2-3p

Publications

• 2018 DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions
• 2014 DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions
• 2008 The database of experimentally supported targets: a functional update of TarBase
• 2005 TarBase: A comprehensive database of experimentally supported animal microRNA targets

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier hsa-let-7a-2-3p is used to demonstrate the providers available for TarBase. A guide for curating additional providers can be found here.