ShareLoc defines terms to annotate data sets from single molecule localization microscopy, including but not limited to: imaging technique, biological structures or molecules of interest, cell types, experimental condition, labeling method, fixation protocol, etc.
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in ShareLoc should match this regular expression:
^\d{6}$ - Example Local Unique Identifier
- 000004 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from ShareLoc should match this regular expression:
^shareloc:\d{6}$ - Example CURIE
- shareloc:000004
Contacts
- Contact
- Missing Contact
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 1 mapping to an external registry.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
OLS
|
ols |
shareloc
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 000004 is used to demonstrate the providers
available for ShareLoc. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| ShareLoc | shareloc |
https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_000004 |
| Bioregistry | bioregistry |
https://bioregistry.io/shareloc:000004 |