This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.

Prefix

seed

Alternative Prefixes

seed.subsystem

Links

Homepage Repository

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in SEED Subsystem should match this regular expression:
^\w+$

Example Local Unique Identifier

Biotin_biosynthesis   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from SEED Subsystem should match this regular expression:
^seed:\w+$

Example CURIE

seed:Biotin_biosynthesis

Publications

2005 The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes

Contributors

• contributor AJ Ireland   0000-0003-1982-9065   ialarmedalien
• contributor Sam Seaver   0000-0002-7674-5194   samseaver

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier Biotin_biosynthesis is used to demonstrate the providers available for SEED Subsystem. A guide for curating additional providers can be found here.