RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
- Prefix
ricenetdb.protein- Links
- Homepage
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in RiceNetDB Protein should match this regular expression:
^LOC\_Os\d{1,2}g\d{5}$ - Example Local Unique Identifier
- LOC_Os01g49190 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from RiceNetDB Protein should match this regular expression:
^ricenetdb\.protein:LOC\_Os\d{1,2}g\d{5}$ - Example CURIE
- ricenetdb.protein:LOC_Os01g49190
Contacts
- Contact
- Missing Contact
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 3 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
RICENETDB.PROTEIN
|
|
Identifiers.org
|
miriam |
ricenetdb.protein
|
|
N2T
|
n2t |
ricenetdb.protein
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier LOC_Os01g49190 is used to demonstrate the providers
available for RiceNetDB Protein. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| RiceNetDB Protein | ricenetdb.protein |
http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=LOC_Os01g49190 |
| Bioregistry | bioregistry |
https://bioregistry.io/ricenetdb.protein:LOC_Os01g49190 |
| Identifiers.org | miriam |
https://identifiers.org/ricenetdb.protein:LOC_Os01g49190 |
| Name-to-Thing | n2t |
https://n2t.net/ricenetdb.protein:LOC_Os01g49190 |