Registry Zebrafish developmental stages ontology

Developmental stages of the Zebrafish

Prefix: zfs
Preferred Prefix: ZFS
Keywords: anatomy developmental biology marine biology obo ontology zoology
Version: 2020-03-10
License: CC-BY-3.0
Links: Homepage Repository OBO OWL
Contact: Ceri Van Slyke 0000-0002-2244-7917 cerivs
Pattern for Local Unique Identifiers: Local identifiers in Zebrafish developmental stages ontology should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0000050 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Zebrafish developmental stages ontology should match this regular expression:
^zfs:\d{7}$
Example CURIE: zfs:0000050

Metaregistry Zebrafish developmental stages ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for zfs with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`ZFS`
BioContext	`biocontext`	`ZFS`
BioPortal	`bioportal`	`ZFS`
FAIRSharing	`fairsharing`	`FAIRsharing.bc8ayj`
OBO Foundry	`obofoundry`	`zfs`
OLS	`ols`	`zfs`
OntoBee	`ontobee`	`ZFS`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE zfs:0000050 is used to demonstrate the provides available for zfs. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Zebrafish developmental stages ontology	`zfs`	http://purl.obolibrary.org/obo/ZFS_0000050
Bioregistry	`bioregistry`	https://bioregistry.io/zfs:0000050
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/ZFS_0000050
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/zfs/terms?iri=http://purl.obolibrary.org/obo/ZFS_0000050
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/ZFS/?p=classes&conceptid=http://purl.obolibrary.org/obo/ZFS_0000050

Get the version:

>>> import bioregistry as br
>>> br.get_version("zfs")
'2020-03-10'

Get the license:

>>> import bioregistry as br
>>> br.get_license("zfs")
'CC-BY-3.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("zfs")
'https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("zfs")
'https://github.com/cerivs/zebrafish-anatomical-ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("zfs")
'http://purl.obolibrary.org/obo/zfs.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("zfs")
'http://purl.obolibrary.org/obo/zfs.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("zfs")
'Ceri Van Slyke'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("zfs")
'van_slyke@zfin.org'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("zfs")
'cerivs'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("zfs")
'0000-0002-2244-7917'